Massachusetts General Hospital, Center for Morphometric Analysis
Internet Brain Segmentation Repository
Data Exchange
On the right is an example from the 90Mb of MR brain scan images which
are available from this IBSR. Manually-guided segmentation results
(shown as green outlines) are provided for some data sets along with
the corresponding MR images. The MR image data is a T1-weighted
3-dimensional coronal brain scan after it has been positionally
normalized. The segmentation or "outline" files are the result of
semi-automated segmentation techniques which require many hours of
effort by a trained expert. Even though manual segmentations cannot
be considered to be 100% "ground truth", they are a good way to begin
comparing automated segmentation methods.
-
Application
You'll need a password to gain access to most of the the image data.
To get one, just fill out this quick
Application for Data.
-
Upload Segmentation and MR Image Data
To add your data to the IBSR, please
email to
arrange the details.
-
Download Segmentation and MR Image Data
- Simulated Data
- Real Data
(requires password).
Here is what is currently available:
- Registered multi-echo scan
- Adult Male: T1-weighted MR Image data with complete expert
segmentations
- 5 year old Child: T1-weighted MR Image data with complete
expert segmentations
- 20 Normal Subjects: T1-weighted MR Image data with
gray/white/other expert segmentations (3.1mm slice thickness)
- 2 Tumor patients: various scans over time
- 18 Scans: T1-weighted MR Image data with expert segmentations of 43 individual structures (1.5mm slice thickness)
- DTMRI
Data
(a link to Susumu Mori's Lab at Johns Hopkins).
-
Segmentation Comparisons
Go to [IBSR Main Page].
Questions about this page should be directed to
Andy.